PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028549918.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C3H

Protein Properties

Length: 596aa MW: 67427.9 Da PI: 7.2119

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028549918.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.3e-09	115	141	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG+Ck+ + C+++H++ XP_028549918.1 115 PGEPECQYFMKTGYCKFKSACRYHHPK 141 5799*********************96 PP
2	zf-CCCH	27.4	6e-09	248	273	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C++f++tG+Ck+ ++C+++H++ XP_028549918.1 248 GKPECQYFMKTGYCKFKATCRYHHPK 273 789*********************96 PP
3	zf-CCCH	26.2	1.3e-08	389	414	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C+ff++tG+Ck+ + C+++H++ XP_028549918.1 389 GKPECQFFMKTGQCKFKSACRYHHPK 414 789*********************96 PP
4	zf-CCCH	25.2	2.9e-08	532	556	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr+f++tG+Ck + C+++H++ XP_028549918.1 532 EPECRYFMKTGHCKLKSACRYHHPK 556 799********************96 PP
5	zf-CCCH	22.4	2.1e-07	569	592	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + ++C ++ r G+Ck+G+ C+++H XP_028549918.1 569 DKPICTYYGR-GICKFGSACRYSHH 592 6799****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MRTGGCKFAS HCRFHHPDPT AVIGDSFQDL KNGVPSQHHV LAEQLCETPM PSENPSNEQT 60 DFLGPFTPNR GFQENVHRKG NQTTTSPLHS REMNINDQRQ ILANRDTAEE YPQRPGEPEC 120 QYFMKTGYCK FKSACRYHHP KSNVSFLGLP QRSSSQQLRE TPLPSENTSK EQTAFLGPSS 180 SYVPDLFTPS HGLKTNAQWN GSQSVTNLLH PSEIKIVDQQ QEFVKRDPAY EFSGGEPQQY 240 DAYPQRPGKP ECQYFMKTGY CKFKATCRYH HPKSNLSFLG LPLRPASNDC KQDGPVEQIC 300 EVPLSSEDAS NDQRAFLCPS SSDVQSLFTP IQGIQPNVQW NVDQAVTSLL YPQETKIINH 360 QQELASKDAA YEFSGGEPQQ HDEYPQRPGK PECQFFMKTG QCKFKSACRY HHPKSNLSFP 420 SLPLRSASNN YEQNGSSEQL SEIPLSSENA LNDQRTVLSP SSSNVQGLFT PEQGLWTTQQ 480 WNGDQMATNP LHPPEIKKNE EKHELANTDT AYDLNGGVKS QQLDEYPQRP NEPECRYFMK 540 TGHCKLKSAC RYHHPKSNRS LLTPPLKPDK PICTYYGRGI CKFGSACRYS HHMEHT

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MRTGGCKFAS HCRFHHPDPT AVIGDSFQDL KNGVPSQHHV LAEQLCETPM PSENPSNEQT  60
DFLGPFTPNR GFQENVHRKG NQTTTSPLHS REMNINDQRQ ILANRDTAEE YPQRPGEPEC  120
QYFMKTGYCK FKSACRYHHP KSNVSFLGLP QRSSSQQLRE TPLPSENTSK EQTAFLGPSS  180
SYVPDLFTPS HGLKTNAQWN GSQSVTNLLH PSEIKIVDQQ QEFVKRDPAY EFSGGEPQQY  240
DAYPQRPGKP ECQYFMKTGY CKFKATCRYH HPKSNLSFLG LPLRPASNDC KQDGPVEQIC  300
EVPLSSEDAS NDQRAFLCPS SSDVQSLFTP IQGIQPNVQW NVDQAVTSLL YPQETKIINH  360
QQELASKDAA YEFSGGEPQQ HDEYPQRPGK PECQFFMKTG QCKFKSACRY HHPKSNLSFP  420
SLPLRSASNN YEQNGSSEQL SEIPLSSENA LNDQRTVLSP SSSNVQGLFT PEQGLWTTQQ  480
WNGDQMATNP LHPPEIKKNE EKHELANTDT AYDLNGGVKS QQLDEYPQRP NEPECRYFMK  540
TGHCKLKSAC RYHHPKSNRS LLTPPLKPDK PICTYYGRGI CKFGSACRYS HHMEHT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	3e-31	C3H family protein