PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550014.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 169aa    MW: 20026.3 Da    PI: 5.3325
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.24.8e-2273159289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      Y++Y++++GFsv+k+++++  ++++ ++ +fvCsk g+++ ++ +  +++ +r+ tr+gC  ++k + ++ g w+v+k+ ++HnH+l
  XP_028550014.1  73 AYRKYGYNLGFSVCKDHHSYWPNSRNLKSMDFVCSKAGFKKLHDLN-IQRKYQRSDTRIGCPVMIKFTVDEGGYWKVKKFIENHNHDL 159
                     59*****************************************999.99999**********************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MPMKMEIDLD LEEDVGYYEQ TIFSQVSEEA DNLENADVQE TSAHESEHVE SVRLDEKFSL  60
SDVYVNEKEA YEAYRKYGYN LGFSVCKDHH SYWPNSRNLK SMDFVCSKAG FKKLHDLNIQ  120
RKYQRSDTRI GCPVMIKFTV DEGGYWKVKK FIENHNHDLP RPEDRHLFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-11FAR1 family protein