PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550028.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-YC

Protein Properties

Length: 249aa MW: 28628.1 Da PI: 6.7225

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	29.4	1.7e-09	6	77	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rik+i+++dedv +i+ +P l+ l r+++ + + +t+ s ++++v + +fdfl ++v r XP_028550028.1 6 DTRFPASRIKRIMQTDEDVGKIALAVPLLVY---------LCDRTYNVTLKRGAKTMCSSHLKQCVHNFSVFDFLKETVNR 77 5789*********************8753.........444788888889999******************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MRKKLDTRFP ASRIKRIMQT DEDVGKIALA VPLLVYLCDR TYNVTLKRGA KTMCSSHLKQ 60 CVHNFSVFDF LKETVNRVPD VGCSVVVGED RSSKRRKAVD DESNVIDEES KRSKREPVHD 120 SRGRGRGRGR GRGRGRRRGS HETEWDFSHY NKYEGGPETS PQHHHKLEQG ENDFNKTELK 180 EIDMTGTPVP VRDFDLNIDL DENGLAMTNP VLAWPPFTYI NKVTIDPLQL ALIDKRIDEE 240 EDYDNEDDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	122	131	RGRGRGRGRG
2	122	132	RGRGRGRGRGR
3	124	133	RGRGRGRGRG
4	124	134	RGRGRGRGRGR
5	126	135	RGRGRGRGRG
6	126	136	RGRGRGRGRGR
7	128	138	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-46	NF-YC family protein