PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550045.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 279aa    MW: 31235 Da    PI: 5.9646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550045.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.5e-06761081854
                     HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     s f+ Lr llP++     +K +Ka+ L +++eYI+ L
  XP_028550045.1  76 SLFQVLRGLLPNS----EQKRDKASFLLEVIEYIRFL 108
                     5799********8....7*****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MESVSRSSKV FEDDDDDEEF GKREGSFHKG GLVCGEARRS REASSLPHLP QFQSPPKMSK  60
FYFCCSYGFG IIFTYSLFQV LRGLLPNSEQ KRDKASFLLE VIEYIRFLHE KVQKYESIYP  120
GWIDENTKLL AWNNHQDSGD NIGDASIIKN GSAPGFVLSE ADNLASHFQW MRASNPGDCA  180
ISNDMLDELT IDEGTISVSC AYSQGLLNNL SEALQNSGID LSRASVSVQI NLGRKSGGRS  240
SKPSLSSKLG WRYYCFSTLY QGACLLAWAF RQKHSECYC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-37bHLH family protein