PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550046.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 276aa    MW: 30623.9 Da    PI: 5.0906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550046.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-054865219
                    HHHHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsa 19
                    r +h++ E+rRR++iN++
  XP_028550046.1 48 RSKHSATEQRRRSKINDS 65
                    889*************95 PP
2HLH19.71.5e-06821141854
                     HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     s f+ Lr llP++     +K +Ka+ L +++eYI+ L
  XP_028550046.1  82 SLFQVLRGLLPNS----EQKRDKASFLLEVIEYIRFL 114
                     5799********8....7*****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MESVSRSSKV FEDDDDDEEF GKREGSFHKE LTLTIDGRSI DQTASAPRSK HSATEQRRRS  60
KINDSKFYFC CSYGFGIIFT YSLFQVLRGL LPNSEQKRDK ASFLLEVIEY IRFLHEKVQK  120
YESIYPGWID ENTKLLAWNN HQDSGDNIGD ASIIKNGSAP GFVLSEADNL ASHFQWMRAS  180
NPGDCAISND MLDELTIDEG TISVSCAYSQ GLLNNLSEAL QNSGIDLSRA SVSVQINLGR  240
KSGGRSSKPS LSSKECLESM GGDESEGGKR QKSNRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-47bHLH family protein