PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550052.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 252aa    MW: 28103.8 Da    PI: 7.3346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550052.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.91.3e-0649811854
                    HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    s f+ Lr llP++     +K +Ka+ L +++eYI+ L
  XP_028550052.1 49 SLFQVLRGLLPNS----EQKRDKASFLLEVIEYIRFL 81
                    5799********8....7*****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MIGGLVCGEA RRSREASSLP HLPQFQSPPK MSKFYFCCSY GFGIIFTYSL FQVLRGLLPN  60
SEQKRDKASF LLEVIEYIRF LHEKVQKYES IYPGWIDENT KLLAWNNHQD SGDNIGDASI  120
IKNGSAPGFV LSEADNLASH FQWMRASNPG DCAISNDMLD ELTIDEGTIS VSCAYSQGLL  180
NNLSEALQNS GIDLSRASVS VQINLGRKSG GRSSKPSLSS KLGWRYYCFS TLYQGACLLA  240
WAFRQKHSEC YC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-37bHLH family protein