PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550085.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

SBP

Protein Properties

Length: 342aa MW: 37660 Da PI: 7.3301

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550085.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.2	8.4e-42	92	168	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C v+gC adls+++eyh+rhkvCe+hsk+p v+v+g+eqrfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q XP_028550085.1 92 TCSVDGCVADLSKCREYHKRHKVCEAHSKTPIVVVAGREQRFCQQCSRFHSLSEFDEGKRSCRKRLDGHNRRRRKPQ 168 6**************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MEWNLKMPPW DLAESHQETE TRFFSLIGSS SESQQQSGRI DCSVDLKLGE LGDFGLSKQW 60 KDGTLRASAS MVTSSGASRR ARVPSSTGHI ATCSVDGCVA DLSKCREYHK RHKVCEAHSK 120 TPIVVVAGRE QRFCQQCSRF HSLSEFDEGK RSCRKRLDGH NRRRRKPQLD TLNPGNLLSN 180 HQGTGYSSHL QISPSTMPDP NWINFSAKSE HGALHSHCLP LQFPFLQQSE AGLGSDRAFS 240 LLSSSAQSSQ IHLSPMAYSA DKISTEQPLQ QCSSAELYPC FHSPTCASMA GMPCVQTEDE 300 NVGSNLVSEA NGTNLHCQGM FQGSSKVLLE GTSETPPNPW QW

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MEWNLKMPPW DLAESHQETE TRFFSLIGSS SESQQQSGRI DCSVDLKLGE LGDFGLSKQW  60
KDGTLRASAS MVTSSGASRR ARVPSSTGHI ATCSVDGCVA DLSKCREYHK RHKVCEAHSK  120
TPIVVVAGRE QRFCQQCSRF HSLSEFDEGK RSCRKRLDGH NRRRRKPQLD TLNPGNLLSN  180
HQGTGYSSHL QISPSTMPDP NWINFSAKSE HGALHSHCLP LQFPFLQQSE AGLGSDRAFS  240
LLSSSAQSSQ IHLSPMAYSA DKISTEQPLQ QCSSAELYPC FHSPTCASMA GMPCVQTEDE  300
NVGSNLVSEA NGTNLHCQGM FQGSSKVLLE GTSETPPNPW QW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	167	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-49	SBP family protein