PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550088.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 300aa MW: 31820.3 Da PI: 6.9368

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.8	4.6e-39	56	140	2	87
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsss 87 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a ss s as XP_028550088.1 56 APKRSSNKDRHTKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaaAAPSSISHAS---T 140 789******************************************************************777432222222222...2 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MDPHGSSELQ HEPPKFLQSQ EKAETQRELQ MVISTSEREF PLVATAEKDD QRKQLAPKRS 60 SNKDRHTKVD GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE PSIIAATGSG 120 TIPASALAAA APSSISHAST AAAGLHPMLN DPPPSTSAAA SRPNWAASLW PPPVPGFGSQ 180 GFLPTSNLGG SSEGPAGGGF MQRIGLPGLE LPGANLGQMS FASLLSGHGQ QIPGLELGLS 240 QDGHIGVLNP HALGQFYLQM GQGRGGGSDE QLQHQHQHHH QQQQQSHGSL NKDDSDGSTQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-60	TCP family protein