PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550169.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family TCP
Protein Properties Length: 325aa    MW: 36223.8 Da    PI: 7.3641
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.77e-37762132134
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsssg.....k 89 
                     + +kdrh ki T++g+RdRR+Rls+++a++fFdLqd L fdk+skt++WLl+++k+aike +     +a   ec  e++  ++s+++++     k
  XP_028550169.1  76 PSRKDRHRKIDTAKGPRDRRMRLSLDVARKFFDLQDLLAFDKASKTVQWLLNESKAAIKEHVAAVKRKAstFEC--EEDIFTVSHNKHSspapsK 168
                     579************************************************************94444412455..3333333333333345743 PP

             TCP  90 aaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                     a+k+aa  ++ ++ ++ + ++a+e r karararert  k+ ++ 
  XP_028550169.1 169 ASKKAAAVRNMRSTTTVNPKVARECRDKARARARERTLAKKEKTM 213
                     34444355555555555688888**************98887664 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MMFPHHNDIY SSFYPSSLPT INGHGSLHDI FSSSSAAAAN NPPLPPQLPL PVEAAAAPEK  60
TASDASLQPL SSRARPSRKD RHRKIDTAKG PRDRRMRLSL DVARKFFDLQ DLLAFDKASK  120
TVQWLLNESK AAIKEHVAAV KRKASTFECE EDIFTVSHNK HSSPAPSKAS KKAAAVRNMR  180
STTTVNPKVA RECRDKARAR ARERTLAKKE KTMMTQCGRQ DEGSEGRKEP LGPQEESSSH  240
EPKSSLEMVA EMDEDCSIIS PIHHKEPDDN GSIAIFDYNQ AMQSVFDDSW DMYLTENVDE  300
RVLFGELQLQ MSSGTLIIPS VFDQM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-24TCP family protein