PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550192.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 505aa MW: 56016.6 Da PI: 5.3135

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550192.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.4	2e-16	326	372	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_028550192.1 326 VHNLSERRRRDRINEKMRALQELIPHC-----NKSDKASMLDEAIEYLKSLQ 372 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MEDDSRLFHD LLHPSNQMRF IGQDNDLVEL LWENGHVVLH NQANCRPSVA VAESKQAQKP 60 ETLLKWGVSV ESSSDLIQED ETSLWLQSPL EDPLDDEFSE FFCDMLTAEP HLNDKLNKGN 120 KCVTFSSLKD SDGFPKLSSL NHQHSMMFPP KSLAFVSVKH SSSFEDDEVL NFSHDRKLLS 180 AEMEPEIRNS GGISSGGENL VRIEESSSMR TIESSICGSN HDQNQVEASL TSSNDGGMKE 240 DSQLGSAQNC RQANTFDLMV DSSSGGSGCS FGRVGQENKT SQGHKRKGRD LEETKCRNED 300 LEQEPVEANK HAQRTSPSRR SRAAEVHNLS ERRRRDRINE KMRALQELIP HCNKSDKASM 360 LDEAIEYLKS LQLQVQIMWM GSGMAPMMFP GVQQYMSRMG IGMGHPPFPP IQNPLQLPGS 420 TVTNDSIQSI SMPNQQLSFP STGINLLNVP NQLPNIHLPV PFSHCLGFFP HMQMPIQNQT 480 AAAVDSSHIP AVGAPSENIQ SGHTG

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MEDDSRLFHD LLHPSNQMRF IGQDNDLVEL LWENGHVVLH NQANCRPSVA VAESKQAQKP  60
ETLLKWGVSV ESSSDLIQED ETSLWLQSPL EDPLDDEFSE FFCDMLTAEP HLNDKLNKGN  120
KCVTFSSLKD SDGFPKLSSL NHQHSMMFPP KSLAFVSVKH SSSFEDDEVL NFSHDRKLLS  180
AEMEPEIRNS GGISSGGENL VRIEESSSMR TIESSICGSN HDQNQVEASL TSSNDGGMKE  240
DSQLGSAQNC RQANTFDLMV DSSSGGSGCS FGRVGQENKT SQGHKRKGRD LEETKCRNED  300
LEQEPVEANK HAQRTSPSRR SRAAEVHNLS ERRRRDRINE KMRALQELIP HCNKSDKASM  360
LDEAIEYLKS LQLQVQIMWM GSGMAPMMFP GVQQYMSRMG IGMGHPPFPP IQNPLQLPGS  420
TVTNDSIQSI SMPNQQLSFP STGINLLNVP NQLPNIHLPV PFSHCLGFFP HMQMPIQNQT  480
AAAVDSSHIP AVGAPSENIQ SGHTG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	336	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-46	bHLH family protein