PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550193.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 497aa MW: 54913.2 Da PI: 4.8988

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550193.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8e-05	330	350	35	55
TS-STCHHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksLq 55 s++ +Ka++L +A+eY+ksLq XP_028550193.1 330 SERSDKASMLDEAIEYLKSLQ 350 67889***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MEDDSRLFHD LLHPSNQMRF IGQDNDLVEL LWENGHVVLH NQANCRPSVA VAESKQAQKP 60 ETLLKWGVSV ESSSDLIQED ETSLWLQSPL EDPLDDEFSE FFCDMLTAEP HLNDKLNKGN 120 KCVTFSSLKD SDGFPKLSSL NHQHSMMFPP KSLAFVSVKH SSSFEDDEVL NFSHDRKLLS 180 AEMEPEIRNS GGISSGGENL VRIEESSSMR TIESSICGSN HDQNQVEASL TSSNDGGMKE 240 DSQLGSAQNC RQANTFDLMV DSSSGGSGCS FGRVGQENKT SQGHKRKGRD LEETKCRNED 300 LEQEPVEANK HAQRTSPSRR SRAAEVHNLS ERSDKASMLD EAIEYLKSLQ LQVQIMWMGS 360 GMAPMMFPGV QQYMSRMGIG MGHPPFPPIQ NPLQLPGSTV TNDSIQSISM PNQQLSFPST 420 GINLLNVPNQ LPNIHLPVPF SHCLGFFPHM QMPIQVMDMY AYGSQLMHQN QTAAAVDSSH 480 IPAVGAPSEN IQSGHTG

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MEDDSRLFHD LLHPSNQMRF IGQDNDLVEL LWENGHVVLH NQANCRPSVA VAESKQAQKP  60
ETLLKWGVSV ESSSDLIQED ETSLWLQSPL EDPLDDEFSE FFCDMLTAEP HLNDKLNKGN  120
KCVTFSSLKD SDGFPKLSSL NHQHSMMFPP KSLAFVSVKH SSSFEDDEVL NFSHDRKLLS  180
AEMEPEIRNS GGISSGGENL VRIEESSSMR TIESSICGSN HDQNQVEASL TSSNDGGMKE  240
DSQLGSAQNC RQANTFDLMV DSSSGGSGCS FGRVGQENKT SQGHKRKGRD LEETKCRNED  300
LEQEPVEANK HAQRTSPSRR SRAAEVHNLS ERSDKASMLD EAIEYLKSLQ LQVQIMWMGS  360
GMAPMMFPGV QQYMSRMGIG MGHPPFPPIQ NPLQLPGSTV TNDSIQSISM PNQQLSFPST  420
GINLLNVPNQ LPNIHLPVPF SHCLGFFPHM QMPIQVMDMY AYGSQLMHQN QTAAAVDSSH  480
IPAVGAPSEN IQSGHTG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	2e-27	bHLH family protein