PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550343.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 173aa    MW: 19580.3 Da    PI: 7.3418
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-1662153198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++++ +s+v    +lv+p +f ++  +++ ++    + + +g++W++++  ++ s    ++ GW++Fv++n+L++gD +vF+l++++e +++v+
  XP_028550343.1  62 FISIMAKSHVQLPYQLVVPTHFHKALPLSTVQG----ILQCRGNTWQIRY--CGDSPLRRFSCGWRKFVEDNELQVGDGCVFELMDDKELTFRVQ 150
                     78899999999999********99998887775....5678*********..6666656699***********************99******** PP

                     EE- CS
              B3  96 vfr 98 
                     +++
  XP_028550343.1 151 ILD 153
                     998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MSNTSDKESI NQPSLCENLL QEQSLSTLES NNAVPNSASR TQVPNKLTFD SKIQPLMGSP  60
YFISIMAKSH VQLPYQLVVP THFHKALPLS TVQGILQCRG NTWQIRYCGD SPLRRFSCGW  120
RKFVEDNELQ VGDGCVFELM DDKELTFRVQ ILDGQIPSKF FKKGSLDRPI NID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-08B3 family protein