PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550462.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 353aa MW: 40678.8 Da PI: 5.0023

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550462.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.2	1.8e-35	41	131	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+ +++++sws+ +nsfvv+d+++fa ++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h+ F +g+k+ll + XP_028550462.1 41 FLTKTYDMVDDAGTDQMVSWSKMSNSFVVWDPHSFAMDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFAHEGFLRGQKHLLMT 126 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 ikr++ XP_028550462.1 127 IKRRR 131 *97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MEPHLPNPVK EENPTGSNPQ PASSFAPRPM AGLQDSWPPP FLTKTYDMVD DAGTDQMVSW 60 SKMSNSFVVW DPHSFAMDLL PKHFKHNNFS SFVRQLNTYG FRKVDPDKWE FAHEGFLRGQ 120 KHLLMTIKRR RAPAHSSHQQ QASEACLEVG KYGLDEEVDR LKRDKSLLMS EVIKLRQDQQ 180 NSKARLQAMT EKLKGIEQKQ QYMMTFLARA MQNPGFVDQL AEQKDKRKEL EEAISKKRKR 240 YINIVPANVN ASTSQLQLQD PESIYTLQGN EQSGYDLLEL ENLVSDVPEE ELNEEQQREV 300 PEEELNEEFW QQLVNEMISD QPGTTDLDLT KPPKMAVVLT SYEQSPLSYP FTC

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MEPHLPNPVK EENPTGSNPQ PASSFAPRPM AGLQDSWPPP FLTKTYDMVD DAGTDQMVSW  60
SKMSNSFVVW DPHSFAMDLL PKHFKHNNFS SFVRQLNTYG FRKVDPDKWE FAHEGFLRGQ  120
KHLLMTIKRR RAPAHSSHQQ QASEACLEVG KYGLDEEVDR LKRDKSLLMS EVIKLRQDQQ  180
NSKARLQAMT EKLKGIEQKQ QYMMTFLARA MQNPGFVDQL AEQKDKRKEL EEAISKKRKR  240
YINIVPANVN ASTSQLQLQD PESIYTLQGN EQSGYDLLEL ENLVSDVPEE ELNEEQQREV  300
PEEELNEEFW QQLVNEMISD QPGTTDLDLT KPPKMAVVLT SYEQSPLSYP FTC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	240	KRKELEEAISKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-100	HSF family protein