PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028550679.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 576aa MW: 62706.2 Da PI: 7.7922

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028550679.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H XP_028550679.1 61 YICEVCHKGFQRDQNLQLHRRGH 83 89*******************88 PP
2	zf-C2H2	11.6	0.00084	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + XP_028550679.1 137 WKCDKCSKRYAVQSDWKAHSKIC 159 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MSNTSEEEES KYLVTGMAVM SGNNSAIASA TKKRRNPPGN PDPDAEVIAL SPRTLIATNR 60 YICEVCHKGF QRDQNLQLHR RGHNLPWKLK QRSSNEVKKK VYVCPEIACA HHDPTRALGD 120 LTGIKKHFSR KHGDKKWKCD KCSKRYAVQS DWKAHSKICG TKEYRCDCGT IFSRKDSFVT 180 HRAFCDALTE ENYRTNHGLA TMAGNLYSQS HNIFSRTMQC QGSSINANTT NISGSDQNSN 240 NALKSLSHNH SVLANSDILF NDGNLGISNV QFSGGSRSLS MSMGSSFMSA TALLQNTTDM 300 GTKAGDESIS PMILRGFTGF PSNTRPSGSL QDTINRYNSN NALLCLDTAE VSSYEGIQSS 360 LQMSSKASGG NASGFREASF VQFPVAGERK ISSVHRRDAG EETGDRRKGR MTKDFLGLGA 420 SGSASVSSSG NTNYFDNECK EAETYQSFLV FCRQVIMSSL CTYMDFSIYF QSLFVAEAIG 480 HSILAVWMFP EVVACCPNAP NSSFHCLDAP GGCVAAVQVA LEDSFAVQGA VKPPNHCLGG 540 FEGLLCCLET SNSLLFSTDS PELKEKGGEA TNFADF

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MSNTSEEEES KYLVTGMAVM SGNNSAIASA TKKRRNPPGN PDPDAEVIAL SPRTLIATNR  60
YICEVCHKGF QRDQNLQLHR RGHNLPWKLK QRSSNEVKKK VYVCPEIACA HHDPTRALGD  120
LTGIKKHFSR KHGDKKWKCD KCSKRYAVQS DWKAHSKICG TKEYRCDCGT IFSRKDSFVT  180
HRAFCDALTE ENYRTNHGLA TMAGNLYSQS HNIFSRTMQC QGSSINANTT NISGSDQNSN  240
NALKSLSHNH SVLANSDILF NDGNLGISNV QFSGGSRSLS MSMGSSFMSA TALLQNTTDM  300
GTKAGDESIS PMILRGFTGF PSNTRPSGSL QDTINRYNSN NALLCLDTAE VSSYEGIQSS  360
LQMSSKASGG NASGFREASF VQFPVAGERK ISSVHRRDAG EETGDRRKGR MTKDFLGLGA  420
SGSASVSSSG NTNYFDNECK EAETYQSFLV FCRQVIMSSL CTYMDFSIYF QSLFVAEAIG  480
HSILAVWMFP EVVACCPNAP NSSFHCLDAP GGCVAAVQVA LEDSFAVQGA VKPPNHCLGG  540
FEGLLCCLET SNSLLFSTDS PELKEKGGEA TNFADF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-109	C2H2 family protein