PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550694.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 98aa    MW: 11335 Da    PI: 9.7382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.4e-093331345
                     HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 13 vdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +d  +++G++ W++Ia  +  gRt++++k++w 
   XP_028550694.1  3 IDMQARFGNK-WARIATFLE-GRTDNDVKNFWS 33
                     678899****.*********.***********5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    
MVIDMQARFG NKWARIATFL EGRTDNDVKN FWSTRQKRLA KLLQTPIPVR SPTNQRKATV  60
CSQVPDSEDV LLQNLNSPSI EFIQFTKCYV NGKELDYI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.14e-20MYB family protein