PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028550789.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 206aa    MW: 22513.7 Da    PI: 9.476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028550789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-081581981055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +R+++ +a+  L   lP+      +  + a+iL k+++YIk+L+
  XP_028550789.1 158 RIYRAKVAEAIKALNNALPNT-----ETGNQASILDKVIDYIKYLK 198
                     89******************8.....579***************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MLPLLSTTSG EKLDRSASPL VKLNPWLQAP YSPLGTKSSK WNYMKRPSLC DTGASRVNQL  60
MPIVHPLDSQ ALNSLSNSLC LAAKVEGLED FSSSRIGYPL TNTHGEQASI LNNVAYEEPA  120
EIGVLMKPKS KHYSSAAQQV EETIATKKDG SSKVISSRIY RAKVAEAIKA LNNALPNTET  180
GNQASILDKV IDYIKYLKHR LNVSDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-08bHLH family protein