PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551170.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

LBD

Protein Properties

Length: 201aa MW: 21374.5 Da PI: 8.3725

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551170.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	29	128	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyf a+qp+kf vh++FGasnv+kllk++p+++reda++sl+yeA++r+rdPvyG+vgvi+ l+++l++ + el+ XP_028551170.1 29 PCAACKFLRRKCQPDCVFAPYFLADQPQKFISVHRVFGASNVTKLLKEIPPKDREDAVNSLAYEADMRIRDPVYGCVGVISILHHELRKIQLELS 123 7*********************************************************************************************9 PP DUF260 96 llkee 100 +++e XP_028551170.1 124 IARSE 128 99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MTSLTPPSSF PPPTPPPCAS ANGATASSPC AACKFLRRKC QPDCVFAPYF LADQPQKFIS 60 VHRVFGASNV TKLLKEIPPK DREDAVNSLA YEADMRIRDP VYGCVGVISI LHHELRKIQL 120 ELSIARSELA RYQFNPPPSP AEISTQYQFG LWPGNQLGFD APATPASASS PAVAFGMNIG 180 GHLMIRAPGA RAAGADGVGP A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	1e-53	LBD family protein