PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551208.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family TCP
Protein Properties Length: 450aa    MW: 49602.6 Da    PI: 7.0596
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551208.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.88e-381212482131
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                      g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+q+a +ai+el+++ ss   e  ++  ++++a+    + + +++ 
  XP_028551208.1 121 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAIEWLIQAAAAAIDELPSLWSSFT-ELpSPTGEQNQAE----QPHPSKSG 210
                     689*************************************************************33333.2233444444444....34556666 PP

             TCP  96 kskksqksaasalnlak.esrakararare.rtrekmr 131
                     +s+ s++s++s+l+l   e   ka +rare + +ek +
  XP_028551208.1 211 CSSTSETSKSSVLSLPCsEICVKAMERAREvSAKEKEK 248
                     999999999999999987889*********77777754 PP
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    
MFSCLSWSPL WSPLLLFIHN SSKITPRHWP SELRYHCSFD IELLHTQHDL GMQMENGNAR  60
KRARFINGGD PSIVLEPKES HRYINDGCSE KKVNMAASSA GGSFRPWQLP SSRIFRVSRA  120
SGGKDRHSKV LTSKGLRDRR VRLSVSTAIQ FYDLQDRLGF DQPSKAIEWL IQAAAAAIDE  180
LPSLWSSFTE LPSPTGEQNQ AEQPHPSKSG CSSTSETSKS SVLSLPCSEI CVKAMERARE  240
VSAKEKEKDG EDGGEHFSGA DHPHGSFTKL LTDQSDSVSD STPVTAGGQF QTLLPSAIVT  300
ADYFGQAGFF TRLPAQTHFV NSSPLVEMAA TGDQLEMQQF SFMQDYIDYN FNFPAASGLS  360
GFQRGTLQSN SSVHLTQQHL RHQLLRFSSP PFSVMVGPNL QLMTPASAPS STENFFCSGL  420
EGRLQVSREL PTPFLLDGYI SSDLKGKGKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.12e-47TCP family protein