PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551210.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 428aa MW: 47364.2 Da PI: 7.4212

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.9	7.3e-38	121	248	2	131
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+q+a +ai+el+++ ss e ++ ++++a+ + + +++ XP_028551210.1 121 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGFDQPSKAIEWLIQAAAAAIDELPSLWSSFT-ELpSPTGEQNQAE----QPHPSKSG 210 689***********************************************************33333.2233444444444....34556666 PP TCP 96 kskksqksaasalnlak.esrakararare.rtrekmr 131 +s+ s++s++s+l+l e ka +rare + +ek + XP_028551210.1 211 CSSTSETSKSSVLSLPCsEICVKAMERAREvSAKEKEK 248 999999999999999987889*******77777754 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MFSCLSWSPL WSPLLLFIHN SSKITPRHWP SELRYHCSFD IELLHTQHDL GMQMENGNAR 60 KRARFINGGD PSIVLEPKES HRYINDGCSE KKVNMAASSA GGSFRPWQLP SSRIFRVSRA 120 SGGKDRHSKV LTSKGLRDRR VRLSVSTAIQ FYDLQDRLGF DQPSKAIEWL IQAAAAAIDE 180 LPSLWSSFTE LPSPTGEQNQ AEQPHPSKSG CSSTSETSKS SVLSLPCSEI CVKAMERARE 240 VSAKEKEKDG EDGGEHFSGA DHPHGGQFQT LLPSAIVTAD YFGQAGFFTR LPAQTHFVNS 300 SPLVEMAATG DQLEMQQFSF MQDYIDYNFN FPAASGLSGF QRGTLQSNSS VHLTQQHLRH 360 QLLRFSSPPF SVMVGPNLQL MTPASAPSST ENFFCSGLEG RLQVSRELPT PFLLDGYISS 420 DLKGKGKN

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MFSCLSWSPL WSPLLLFIHN SSKITPRHWP SELRYHCSFD IELLHTQHDL GMQMENGNAR  60
KRARFINGGD PSIVLEPKES HRYINDGCSE KKVNMAASSA GGSFRPWQLP SSRIFRVSRA  120
SGGKDRHSKV LTSKGLRDRR VRLSVSTAIQ FYDLQDRLGF DQPSKAIEWL IQAAAAAIDE  180
LPSLWSSFTE LPSPTGEQNQ AEQPHPSKSG CSSTSETSKS SVLSLPCSEI CVKAMERARE  240
VSAKEKEKDG EDGGEHFSGA DHPHGGQFQT LLPSAIVTAD YFGQAGFFTR LPAQTHFVNS  300
SPLVEMAATG DQLEMQQFSF MQDYIDYNFN FPAASGLSGF QRGTLQSNSS VHLTQQHLRH  360
QLLRFSSPPF SVMVGPNLQL MTPASAPSST ENFFCSGLEG RLQVSRELPT PFLLDGYISS  420
DLKGKGKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	7e-42	TCP family protein