PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551326.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 367aa    MW: 39853.4 Da    PI: 6.1677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.4e-062572941254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_028551326.1 257 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 294
                     677888999*******998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    
MAEDFQANNW WKTSRGSGGG GGGAGGGFDG GSPATSSNVS CSTTITDVTG APFAWVGGGA  60
ARPIMDSTLQ LSGFGLSSPS MDWNQTLLSS GGRAESSFQA MLQEDLNSRS NFSAAMDAGE  120
SSSSVQLRDM NHPFFFENSI ISSGTFPLVS SSSSSSIMQG LLETDSRPEL SIFDSQHMLQ  180
YQHSQFLQQK QQSAIINHLQ FANNTPFWNA SASASAQPFE LPMKSFDGGR EKKNSSEPAM  240
KKIRAETPST LPTFKVRKEK LGDRITALQQ LVSPFGKTDT ASVLHEAIEY IKFLHDQISV  300
LSTPYLKNGH PIQQQQQQSL EKLKEGEWQK QDLRSRGLCL VPISSTCLMA TEPTADFWTP  360
TFGGTYR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.38e-57bHLH family protein