PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551327.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 326aa    MW: 35458.6 Da    PI: 6.5166
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551327.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48e-062162531254
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_028551327.1 216 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 253
                     677888999*******998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    
MAEDFQANNW WKTSRGSGGG GGGAGGGFDG GSPATSSNVS CSTTITDVTG APFAWVGGGA  60
ARPIMDSTLQ LSGFGLSSPS MDWNQTLLSS GGRAESSFQA MLQEDLNSRS NFSAAMDAGL  120
LETDSRPELS IFDSQHMLQY QHSQFLQQKQ QSAIINHLQF ANNTPFWNAS ASASAQPFEL  180
PMKSFDGGRE KKNSSEPAMK KIRAETPSTL PTFKVRKEKL GDRITALQQL VSPFGKTDTA  240
SVLHEAIEYI KFLHDQISVL STPYLKNGHP IQQQQQQSLE KLKEGEWQKQ DLRSRGLCLV  300
PISSTCLMAT EPTADFWTPT FGGTYR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-57bHLH family protein