PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551375.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family B3
Protein Properties Length: 257aa    MW: 29275.6 Da    PI: 9.4926
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.5e-18101188196
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v++  +l lp kf+++h   + ++++++lede+g++ e  +i r+++    l++GW++F+ +++L++gD +vFkl++ s+f  +++
  XP_028551375.1 101 FVKSMLRSHVSSCFWLGLPTKFCRDHL--PLCETKMILEDEEGEEHEAIYIGRRTG----LSGGWRSFAVDHKLEDGDALVFKLIELSRF--KIH 187
                     89************************5..457889***************544444....************************987888..555 PP

                     E CS
              B3  96 v 96 
                     +
  XP_028551375.1 188 I 188
                     4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MEASIHAYED IRRKRIEKNL KQLEDLGIAR ISKSLLEVAK RESKQLVVDS GKRRLYYRRS  60
CKSEPIGREY TGRIASYEEK VVALKKAEML LTEVSSNHPS FVKSMLRSHV SSCFWLGLPT  120
KFCRDHLPLC ETKMILEDEE GEEHEAIYIG RRTGLSGGWR SFAVDHKLED GDALVFKLIE  180
LSRFKIHIVK AIVGSTEAKD EKALYEDPCA SIESIKTADS SCESKSSLFA IQVPKNKSED  240
LSRNARKRKQ SKPRPSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-47B3 family protein