PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551383.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 243aa MW: 26202.6 Da PI: 8.3428

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551383.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.4e-18	10	55	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll ++v+++G ++W++I++ ++ gR++k+c++rw + XP_028551383.1 10 KGSWSPEEDALLMRLVERHGARNWTLISAGIQ-GRSGKSCRLRWCNQ 55 799***************************.*********985 PP
2	Myb_DNA-binding	56.5	6.6e-18	64	106	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed ++vda++++G++ W+tIar ++ gRt++ +k++w++ XP_028551383.1 64 PFTATEDAIIVDAHREYGNK-WATIARLLP-GRTDNAIKNHWNST 106 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MEGGGDEKIK GSWSPEEDAL LMRLVERHGA RNWTLISAGI QGRSGKSCRL RWCNQLSPDV 60 HHRPFTATED AIIVDAHREY GNKWATIARL LPGRTDNAIK NHWNSTLRRR RRVEATSISA 120 ALSAAALSVP ESDSESGGKR PCRRDDLILR VVEPMTPEAV DPATSLSLSP PGESSAAAAP 180 SAPDIGTGGG CMEKGWLGNA TLMSVMKKVI AEEVRKYMGE LRLQSGGGFL SIVKAESTSN 240 GQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-53	MYB family protein