PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551566.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 508aa MW: 57596.5 Da PI: 6.4119

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	379	427	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+v q+G g+W+ I r + Rt+ ++k++w+++l XP_028551566.1 379 QWTHSEVAKLVDGVSQYGVGRWTEIKRLFFstsSYRTAVDLKDKWRNLL 427 6***************************999************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MYLSSKSLEN CLNVGGTPCS DGYYDQGNDY GILVADAEQV EIQALKYEFM LQEPEENENP 60 HITCNLSCDC SDYLLEAVSA ETFMDYPSNS EATVRNMEYT SQVQCMDRDV DEVKPDYIAR 120 TFAIATLDHS TGAPDSTKFL SHDTLHGTFF QNASLEAQKW LKHELLLFDQ QNLTELGNVC 180 DQMDSAFLSS ENEDDMILIP GNEIPERVFS SFVSLPHTGA LVSSAAKNEL PYRDGQAALD 240 CRGQEILGTT NDSMMTTKRL RKPTRRYIEE SSETKPRSSY DRLKTSLISS KEKLLHARAA 300 GKCRWSGAVQ LLYQDYPGRV HSLRGFRRKR TKQLENDGKG YNLTPESAKI SCFQDSELQD 360 DPSDEHPTRV HKRRKHHRQW THSEVAKLVD GVSQYGVGRW TEIKRLFFST SSYRTAVDLK 420 DKWRNLLRAS LADPANKNLV EPQKKHASAP MPESILQRVR ELSIIHPYPR SQKSTITDLP 480 ILPPPTSLTN TEDALNRSGR ILHRLSFS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MYLSSKSLEN CLNVGGTPCS DGYYDQGNDY GILVADAEQV EIQALKYEFM LQEPEENENP  60
HITCNLSCDC SDYLLEAVSA ETFMDYPSNS EATVRNMEYT SQVQCMDRDV DEVKPDYIAR  120
TFAIATLDHS TGAPDSTKFL SHDTLHGTFF QNASLEAQKW LKHELLLFDQ QNLTELGNVC  180
DQMDSAFLSS ENEDDMILIP GNEIPERVFS SFVSLPHTGA LVSSAAKNEL PYRDGQAALD  240
CRGQEILGTT NDSMMTTKRL RKPTRRYIEE SSETKPRSSY DRLKTSLISS KEKLLHARAA  300
GKCRWSGAVQ LLYQDYPGRV HSLRGFRRKR TKQLENDGKG YNLTPESAKI SCFQDSELQD  360
DPSDEHPTRV HKRRKHHRQW THSEVAKLVD GVSQYGVGRW TEIKRLFFST SSYRTAVDLK  420
DKWRNLLRAS LADPANKNLV EPQKKHASAP MPESILQRVR ELSIIHPYPR SQKSTITDLP  480
ILPPPTSLTN TEDALNRSGR ILHRLSFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	6e-30	MYB_related family protein