PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551670.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 528aa    MW: 58539.2 Da    PI: 6.2339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551670.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS459.81.6e-1401585281374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+avs++++++a++l+++l++++s +g+p++Rl ay++e+L arl++s+s++ykal+++e +   ss+ ++++++++ev+P++kf++
  XP_028551670.1 158 LRHVLTACARAVSESNFAAAEWLITELRQMVSVSGEPIERLGAYLLEGLVARLSSSGSSIYKALKCKEPA---SSDLMSYMHILYEVCPYFKFGY 249
                     689******************************************************************9...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea+++e+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg++++ +   +   l+ +g+rL+++Ae+++vpfef++ +  +  +
  XP_028551670.1 250 MSANGAIAEALKNEDRVHIIDFQIAQGSQWVTLIQALAARPGGPPHVRITGIDDSFNAyaRGGGLHIVGQRLSRLAESCKVPFEFHP-ALMSGCE 343
                     ******************************************************777688999************************.7889999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e+e+L v+pgEalaVnl++qlh+++desvs++++rd++L+lvksl Pkvv++veqe+++n++ F+ rf+e+l++y+a+f+s++++lpr+++eri
  XP_028551670.1 344 VEVENLGVRPGEALAVNLAFQLHHIPDESVSTTNHRDRILRLVKSLTPKVVTLVEQESNTNTAAFFPRFMETLDHYTAIFESIDVTLPRDNKERI 438
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r+ivn++aceg er+erhe  +kW++r+++aGF+p+pls+ +++++k+ll+++ +  yr+ee +g+l+lgW++r+Lv+ SaWr
  XP_028551670.1 439 NVEQHCLARDIVNIIACEGIERVERHEVHGKWKSRFKMAGFTPYPLSSLVNATIKSLLENYCD-KYRLEEIDGALYLGWMNRALVVSSAWR 528
                     *************************************************************95.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MLVNFTPMQA SDNRRNSGKS QQSHSLQNSM HLRESGPNYL PQNFKSSRHG SQMRKISPQS  60
SNVQYCTLES SSAVATYTYS SPSTASFSSA SDSQGSHQDC HSDTASESPI SASCVTEDLN  120
DLKGKLKELE SVMLGPELDA VDSFDTFELL MELPSGDLRH VLTACARAVS ESNFAAAEWL  180
ITELRQMVSV SGEPIERLGA YLLEGLVARL SSSGSSIYKA LKCKEPASSD LMSYMHILYE  240
VCPYFKFGYM SANGAIAEAL KNEDRVHIID FQIAQGSQWV TLIQALAARP GGPPHVRITG  300
IDDSFNAYAR GGGLHIVGQR LSRLAESCKV PFEFHPALMS GCEVEVENLG VRPGEALAVN  360
LAFQLHHIPD ESVSTTNHRD RILRLVKSLT PKVVTLVEQE SNTNTAAFFP RFMETLDHYT  420
AIFESIDVTL PRDNKERINV EQHCLARDIV NIIACEGIER VERHEVHGKW KSRFKMAGFT  480
PYPLSSLVNA TIKSLLENYC DKYRLEEIDG ALYLGWMNRA LVVSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein