PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551762.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 26779.6 Da    PI: 7.4689
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.21.4e-25958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien+ nrqvtfskRr g+lKKA+EL vL+da++ +i+fs +gkly y 
  XP_028551762.1  9 KRIENTNNRQVTFSKRRVGLLKKAHELAVLTDARIGLIVFSASGKLYQYQ 58
                    79**********************************************97 PP
2K-box61.14.4e-21821701199
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + +++l+ e+ak+++e++ Lq +++++ GedL+ L++++L+qLe+qLe s+ k+R++Kn+ll +q+e+l +k    ++  ++ ++++e
  XP_028551762.1  82 RNIHQQLHSEIAKIRNETDRLQLSLKQITGEDLTGLTVNDLNQLEEQLEFSVGKVRTRKNQLLNQQLENLHRKVMFEHHVMMEQQHEIE 170
                     567999*******************************************************************8877766666666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MGRGKIEIKR IENTNNRQVT FSKRRVGLLK KAHELAVLTD ARIGLIVFSA SGKLYQYQSP  60
GSSMEEIIDR FLKAENIQFE NRNIHQQLHS EIAKIRNETD RLQLSLKQIT GEDLTGLTVN  120
DLNQLEEQLE FSVGKVRTRK NQLLNQQLEN LHRKVMFEHH VMMEQQHEIE EQKEREIREM  180
GFLEPFGQIL DDSRSLLHLG PEIHPFQLQP IQPNLQEAEL HGHRRKLW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.39e-42MIKC_MADS family protein