PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551763.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27753.7 Da    PI: 6.7498
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.84.4e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien+snrqvtfskRr g+lKKA+EL vL+da++ +i+fs +gkly y 
  XP_028551763.1  9 KRIENTSNRQVTFSKRRGGLLKKAHELAVLTDARIGLIVFSASGKLYQYQ 58
                    79**********************************************97 PP
2K-box59.31.6e-20821701199
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      + +++l+ e++k++ e++ Lq +++++ GedL+ L++++L+qLe+qLe s+ k+R++Knell +q+e+l +k    ++  ++ ++++e
  XP_028551763.1  82 RNIHQQLHCEITKIRHETDRLQLNLKQITGEDLTGLTVNDLNQLEEQLEFSVGKVRTRKNELLNQQLENLHRKVMFEHQVMMEQQHEIE 170
                     5668999******************************************************************9888887777777776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    
MGRGKIAIKR IENTSNRQVT FSKRRGGLLK KAHELAVLTD ARIGLIVFSA SGKLYQYQSP  60
GSSMEEIIDR FLIAENIQFE NRNIHQQLHC EITKIRHETD RLQLNLKQIT GEDLTGLTVN  120
DLNQLEEQLE FSVGKVRTRK NELLNQQLEN LHRKVMFEHQ VMMEQQHEIE EQKEREIREM  180
GFLEPFGQIL DDSRSLLHLG PEIHPFQLQP IQPNLQEAEL HGHRRQLWLK EAVMEVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.36e-40MIKC_MADS family protein