PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551832.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 257aa MW: 29169 Da PI: 7.266

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.6	1.6e-14	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++W eEde+l++++k+ G g+W+++ + g+ R +k+c++rw+++l XP_028551832.1 13 KLSWRSEEDEILIKYIKRNGLGNWNLVGKNSGLSRDGKSCRLRWLNHL 60 689*******************************************97 PP
2	Myb_DNA-binding	29.2	2.2e-09	68	107	2	43
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 +++++ E + + ++ lG++ W+ Iar ++ gRt++++k++ XP_028551832.1 68 LPFSEKEKLVIFSEHAVLGNK-WSDIARQLP-GRTDNEIKNF 107 58999999999999*****.*****.******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MEARRKGKGI SRKLSWRSEE DEILIKYIKR NGLGNWNLVG KNSGLSRDGK SCRLRWLNHL 60 QPGLKKNLPF SEKEKLVIFS EHAVLGNKWS DIARQLPGRT DNEIKNFMNI HKKKCLKNGV 120 ISIYPPEISM RYTDNGTTEF PKIASSGDHD SVVHQLVELM DLPSIQNTEK DVIDILFSPY 180 LHNPHSSFEL LPQPQLAAAH QSSNTSFNVL SSEQCSNLSI ADLLYSDYSM DGNLDCWLQF 240 ISSSGWEETS SHFSLDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55020.1	7e-40	MYB family protein