PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028551839.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 468aa MW: 53273.1 Da PI: 7.56

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028551839.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	25.5	2.2e-08	4	29	32	57
HHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 32 eLAkklgLterqVkvWFqNrRakekk 57 e Akk+gL+e+qV+ WF+ rR ke+k XP_028551839.1 4 EFAKKIGLSEKQVSGWFCHRRLKERK 29 789*********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MKLEFAKKIG LSEKQVSGWF CHRRLKERKI LQGEIYTNGK QNLSSSGIHD LISGIKQESC 60 SSTKQVDRNL DSKEVESKMY YAYKSSSDAL ACEAHNKHPH IGNNHVAEDR SSGGNSASQG 120 SLLQSNENLY VAQPSRYKLC DDSSLLMSNK NTVIKSEDHL VNPRYSFLQD ETDSPAISAL 180 KWNLGRHYRE DGPLLSFEFD PLPPGAFDSP VRDSKCEPYY VGDSMQHDSS SFYRSINEHR 240 VYDKYYAEKL ASEACQEQRS SKRTKPGFID SNEITNLGST QNAIPNHVQY QAISIDETEK 300 SMNRTSCFDG RNNLRFLNSK TEWGYGCKDG YNVQQNSQST NIKNYFPCPN YDTEVFQGEY 360 FDTKPFVAAP KKYDSISSEC WHQPQKILKD NTRNENTKRN HSAIQPDMFI KSRNNRIEKV 420 NGIGLWKQQC PVKGLEKPAR QVPLIRHHLD VDSNLHQDVS GDTSLSLD

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MKLEFAKKIG LSEKQVSGWF CHRRLKERKI LQGEIYTNGK QNLSSSGIHD LISGIKQESC  60
SSTKQVDRNL DSKEVESKMY YAYKSSSDAL ACEAHNKHPH IGNNHVAEDR SSGGNSASQG  120
SLLQSNENLY VAQPSRYKLC DDSSLLMSNK NTVIKSEDHL VNPRYSFLQD ETDSPAISAL  180
KWNLGRHYRE DGPLLSFEFD PLPPGAFDSP VRDSKCEPYY VGDSMQHDSS SFYRSINEHR  240
VYDKYYAEKL ASEACQEQRS SKRTKPGFID SNEITNLGST QNAIPNHVQY QAISIDETEK  300
SMNRTSCFDG RNNLRFLNSK TEWGYGCKDG YNVQQNSQST NIKNYFPCPN YDTEVFQGEY  360
FDTKPFVAAP KKYDSISSEC WHQPQKILKD NTRNENTKRN HSAIQPDMFI KSRNNRIEKV  420
NGIGLWKQQC PVKGLEKPAR QVPLIRHHLD VDSNLHQDVS GDTSLSLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-31	HB-other family protein