PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028551992.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 258aa    MW: 29138.2 Da    PI: 7.3446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028551992.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.6e-1184131454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++  rE+ RRdr+N++f eL ++l +    + +Kl+K++iL  A++ + +L
  XP_028551992.1  84 SKACREKMRRDRLNDKFLELGSILEPG---KPPKLDKVAILCDATRMVTQL 131
                     5778**********************9...99*************999888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MASPENPNWL LDCPLIDDLS APPANGFIWA PQEFNHQSKV RPPFSTHEGY VSMGANDPFV  60
ETETFKEQGS QKRARSESSS QAGSKACREK MRRDRLNDKF LELGSILEPG KPPKLDKVAI  120
LCDATRMVTQ LRADAQKLND LNQTLQDKIK ELKLRLFSST WNPPPTEWIK LNVDASLREN  180
YAAGVGGVLR DCKGRFLFAF GFKRMHWDCS TLEVEAVISF NKVIQEWMFE AKGIIIEGDN  240
YNVLKFIQNT IKEGVQGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.18e-45bHLH family protein