PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552051.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 303aa MW: 33115.9 Da PI: 5.6456

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++ G g+W + ++ g+ R++k+c++rw +yl XP_028552051.1 14 KGPWTPEEDKILVDYIQSNGHGSWCSLPKLAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	52.5	1.1e-16	67	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ +++++ G+++W+tIa+ ++ gRt++++k++w+++l XP_028552051.1 67 RGPFTQEEQKSIIQLHGIVGNNRWSTIAAQLP-GRTDNEIKNYWNTHL 113 89****************************.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MGRAPCCAKQ GLKKGPWTPE EDKILVDYIQ SNGHGSWCSL PKLAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF TQEEQKSIIQ LHGIVGNNRW STIAAQLPGR TDNEIKNYWN THLKKRLLRM 120 GINPDTYAPA SPSSSAAAAS ASFPATRHMA QWESARLEAE ARLSRESILF SSTSSAPADS 180 EPADDSLTAG KPETDFFLRI WNSEVGDAFR KPLPTLHSAA EQVVDDATAP TAESKCCASA 240 GVEVPSGHDS SSSNEVDETS DETYQLYLNL AGDELGLFHG QMGSFSLFST DLNDVVFLDT 300 AFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	3e-98	MYB family protein