PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552081.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 360aa    MW: 40182.3 Da    PI: 9.0244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552081.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.9e-1182136147
                      TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++            +Wk+I + +g  +t  q++s+ qky
   XP_028552081.1  82 RESWTEQEHDKFLEALQLYAFVlavsfrfdrDWKKIEAFVG-SKTVIQIRSHAQKY 136
                      789*****************99*******************.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MLYAIPAAEG GGSEFRGQAG FSADSFHRHH HQQQQQQQKG IPTGMVFQEV LGSITTSAAA  60
EETSSEDPNK KIRKPYTITK SRESWTEQEH DKFLEALQLY AFVLAVSFRF DRDWKKIEAF  120
VGSKTVIQIR SHAQKYFLKV QKNGTSEHVP PPRPKRKAAH PYPQKASKNG HQVPQPTTSF  180
QTSPCLPEPV YTLTSDRSSV IRNSTSGAIS SWVPIQPVEA LHTIKDAGPT GSMLLNNSSS  240
SSSTENPQRI RQICETTDQG HHVPSVRDFA RVYSFIGNIF DPSKRGHLQK LMEMDPIDVE  300
TVLLLMRNLS INLTNPDFED HRRLLSLYDA CAEEGKSSGT KGMLKAAEPI NVPFLVKAEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.23e-80MYB_related family protein