PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552167.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 533aa MW: 58799.6 Da PI: 8.4512

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.4e-09	335	382	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k Ka +L + ++Y++sLq XP_028552167.1 335 SHSLAERVRREKISLRMKLLQDLVPGC----NKITGKALMLDEIINYVQSLQ 382 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MTINIGWIIF TVKGSKSIKH KQISDMQLHF SHPCSVYVDA AAANLSRIYA RVVRANLNWV 60 FKISAFFSFL IPAPNSFQGL QNLSILFALR SLTLQFSKGE DFSSPEMNYE PPPRDQLLPS 120 CLPNLNWNHS MDFLATILPS QTTPAAAVAI SGEFSSFMDD PLNSMHINSL MSAPNDPAFT 180 ERAANYSSNA ENYGSIMGQF GLPQAGRLSR VSSRKFLNAK ESPIQSLAQS EIGDGEFGSG 240 LEDSSVTNPA SVTGDRTVKK RKAAYKSKGK LAEGNNLNAK KCRSAESTEK DEASEKAKED 300 QNIDKKNGKV NGLKILDPPT DYIHVRARRG QATDSHSLAE RVRREKISLR MKLLQDLVPG 360 CNKITGKALM LDEIINYVQS LQRQVEFLSM KLATVNPRLD FNLDNLITKE SLTNHAKALL 420 SNSLIPIDNL PAAIPFVHQS REGIPFPRTV SNVFETNCSM SQYESILYQP SSMESSLDMF 480 GGATSQVGNL LEDVFHNVIQ TSFGQNQQNQ QIGVTSPSFH AGQLSTANMK IEH

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MTINIGWIIF TVKGSKSIKH KQISDMQLHF SHPCSVYVDA AAANLSRIYA RVVRANLNWV  60
FKISAFFSFL IPAPNSFQGL QNLSILFALR SLTLQFSKGE DFSSPEMNYE PPPRDQLLPS  120
CLPNLNWNHS MDFLATILPS QTTPAAAVAI SGEFSSFMDD PLNSMHINSL MSAPNDPAFT  180
ERAANYSSNA ENYGSIMGQF GLPQAGRLSR VSSRKFLNAK ESPIQSLAQS EIGDGEFGSG  240
LEDSSVTNPA SVTGDRTVKK RKAAYKSKGK LAEGNNLNAK KCRSAESTEK DEASEKAKED  300
QNIDKKNGKV NGLKILDPPT DYIHVRARRG QATDSHSLAE RVRREKISLR MKLLQDLVPG  360
CNKITGKALM LDEIINYVQS LQRQVEFLSM KLATVNPRLD FNLDNLITKE SLTNHAKALL  420
SNSLIPIDNL PAAIPFVHQS REGIPFPRTV SNVFETNCSM SQYESILYQP SSMESSLDMF  480
GGATSQVGNL LEDVFHNVIQ TSFGQNQQNQ QIGVTSPSFH AGQLSTANMK IEH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-53	bHLH family protein