PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552410.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GATA
Protein Properties Length: 257aa    MW: 28733.3 Da    PI: 6.7673
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.4e-17168201134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C + kTp+WR gp g+ktLCnaCG++y++ +
  XP_028552410.1 168 CMHCESRKTPQWRAGPMGPKTLCNACGVRYKSGR 201
                     99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MRCEDPFDSI DDLLDFQNYD DLLEMVDGCG NGGSVAPLQA PAITGGIHGR PAAITDEQIS  60
SEDDALSMCN DAEIINSDWL SNFLEDSELN FFNAIEFGLQ SPISVLETNI ASTSSTPNPH  120
MTRTRTKRPR AQVTHPISPS LTRWAPEPET MGKRRKSNVV DFNMARKCMH CESRKTPQWR  180
AGPMGPKTLC NACGVRYKSG RLFPEYRPAE SPSFVPSIHS NSHKKVVEMR RLRANLSSSE  240
DNVRAKNCDL LNYIRNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128RTRTKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-41GATA family protein