PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552416.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26263.1 Da    PI: 8.4374
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.84e-30958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k ienk+nrqvtfskRrng++KKA+ELSvLCdaeva+iifss+gkl+e+ 
  XP_028552416.1  9 KLIENKINRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSSSGKLFEFG 58
                    569*********************************************95 PP
2K-box79.77.3e-27861591285
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                     + + ++  el+kLk+++e+Lq++qRhllGedL+ L+lk+L++LeqqLe++l+  R++++e++l+q+eel+kk  
  XP_028552416.1  86 EAQTKWFMELSKLKAKYESLQQSQRHLLGEDLDALTLKDLEHLEQQLESALSLGRQRRTEIMLNQMEELKKKLA 159
                     4567899****************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MGRGRVELKL IENKINRQVT FSKRRNGLMK KAFELSVLCD AEVALIIFSS SGKLFEFGSP  60
DSIAKTLGRY QRYNFTPQEM DPADIEAQTK WFMELSKLKA KYESLQQSQR HLLGEDLDAL  120
TLKDLEHLEQ QLESALSLGR QRRTEIMLNQ MEELKKKLAA EYKPMRSIHR SWRPDAVVAT  180
GALPDHPTHP IVMDTEPTLQ IGYPHYESSE ATIPRNVGAQ NNFMQGWTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-68MIKC_MADS family protein