PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552630.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 219aa    MW: 23405.5 Da    PI: 8.3485
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.31.9e-1397189186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr..t.sessstcpyfdqle 86 
                     +W++  + aLi+a  e   +l+ g+lk+++W+ev++++      ++  ++ +qCk++++ l+k+yk +k + +    t    ss++p+fd+l+
  XP_028552630.1  97 CWSEGATSALIDAWGEHFLELSGGNLKQKHWQEVAEVVschdDYTKPLKTDVQCKNRIDTLKKKYKIEKSNISAAagTgLSFSSSWPFFDRLD 189
                     7*************************************6544333445699***************9988766552233456889*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MATPSPPFRH SGETNTTKIH QSEITSLSSC SSLLSTTPLP PTTIYVVHPS VSLPPPTNAH  60
SSDSVTIATP APRHQTLTLA LPIQPRPGSS GGGREDCWSE GATSALIDAW GEHFLELSGG  120
NLKQKHWQEV AEVVSCHDDY TKPLKTDVQC KNRIDTLKKK YKIEKSNISA AAGTGLSFSS  180
SWPFFDRLDI LLGLIMKTPP SAAPAKQPSP AAVATIARS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-48Trihelix family protein