PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552707.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 348aa MW: 38967.2 Da PI: 7.8778

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552707.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.3	2.7e-16	105	150	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ XP_028552707.1 105 RGHWRPAEDSKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 150 899***************************.*********996 PP
2	Myb_DNA-binding	56.4	6.7e-18	157	200	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ XP_028552707.1 157 RSAFTEEEEEKLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 200 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MALHHCSGTA HGMVNRFIQA QPQQVDSHSS SPSSTKSFFS QMVSLSINPS SSHSTHHFFP 60 FTESSDTSEL FGEKHTIDVA EEEISRDGGG ENTNDSSDQS KLCARGHWRP AEDSKLKELV 120 AIYGPQNWNL IAEKLEGRSG KSCRLRWFNQ LDPRINRSAF TEEEEEKLMA AHRLYGNKWA 180 MIARLFPGRT DNAVKNHWHV IMARKYREQS TAYRRRKLSQ AMHLRLDENT TSSRPHPPFY 240 FSSSMVSSST PPAYHIPTAG MGSLKQKPSD FIISGHNADQ ERTDMFRQND HEIQILQGSY 300 SHQASVLFAM HQSPRYLPYN TSAASSSSSG ETPAHSAEVE ALAVGGKA

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MALHHCSGTA HGMVNRFIQA QPQQVDSHSS SPSSTKSFFS QMVSLSINPS SSHSTHHFFP  60
FTESSDTSEL FGEKHTIDVA EEEISRDGGG ENTNDSSDQS KLCARGHWRP AEDSKLKELV  120
AIYGPQNWNL IAEKLEGRSG KSCRLRWFNQ LDPRINRSAF TEEEEEKLMA AHRLYGNKWA  180
MIARLFPGRT DNAVKNHWHV IMARKYREQS TAYRRRKLSQ AMHLRLDENT TSSRPHPPFY  240
FSSSMVSSST PPAYHIPTAG MGSLKQKPSD FIISGHNADQ ERTDMFRQND HEIQILQGSY  300
SHQASVLFAM HQSPRYLPYN TSAASSSSSG ETPAHSAEVE ALAVGGKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	7e-76	MYB family protein