PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552738.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NAC
Protein Properties Length: 192aa    MW: 21732.4 Da    PI: 9.8715
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.97.3e-48141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelv +yLk+kv + +l++  +i+e+d+ k++PwdLp     +e+e yfF  r+ ky++g+r nra+ sgyWk tgk+k+++++
  XP_028552738.1  14 LPPGFRFHPTDEELVLQYLKRKVFSFPLPA-AIIPEIDLGKYDPWDLP---GVGEQERYFFYLRAAKYPNGRRVNRAMGSGYWKITGKEKPIFAS 104
                     79***************************9.88***************...347899************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vg+kk+Lvfy+g+ap g ktdW+mhey l
  XP_028552738.1 105 kSNQVVGMKKVLVFYHGKAPAGGKTDWFMHEYCL 138
                     56778***************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MANPNTAKLG ALRLPPGFRF HPTDEELVLQ YLKRKVFSFP LPAAIIPEID LGKYDPWDLP  60
GVGEQERYFF YLRAAKYPNG RRVNRAMGSG YWKITGKEKP IFASKSNQVV GMKKVLVFYH  120
GKAPAGGKTD WFMHEYCLAG AGADAGVCSF GKRSNLVHVS SLSLSLPYPI CPFYVLFTKY  180
LYIYIYLYNI LI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-66NAC family protein