PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028552867.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14477 Da    PI: 11.901
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028552867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRr+g+lKKA+ELSvLCd+eva+iifs++gklye++s
  XP_028552867.1  9 KRIENKINRQVTFAKRRTGLLKKAYELSVLCDVEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    
MGRGRVEMKR IENKINRQVT FAKRRTGLLK KAYELSVLCD VEVALIIFSN RGKLYEFCSS  60
RSLLRTRMTR KPQPAATISR PGSPATSSPR LRALARPFPS MKAPPPHPPW MRPATARSPA  120
CLRCADGQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.33e-35MIKC_MADS family protein