PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028552881.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 419aa MW: 47549.5 Da PI: 7.9589

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028552881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.7	4.1e-31	250	304	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtp+LHe+Fv +v+ LGGsekAtPk il+lm+ +gLt++h+kSHLQkYR+ XP_028552881.1 250 KTRIRWTPDLHEKFVACVNCLGGSEKATPKGILKLMDSDGLTIYHIKSHLQKYRI 304 68****************************************************7 PP
2	Myb_DNA-binding	45.9	1.3e-14	254	303	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 rWT++++e++v +v+ lGg t+k I + m g+t +++ks++qky+ XP_028552881.1 254 RWTPDLHEKFVACVNCLGGSekaTPKGILKLMDsDGLTIYHIKSHLQKYR 303 9***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MNTKKIGCHE PTYGSSNCSS SEFVNPSCEK FNCPSLLFDC SPWKNNLNSS NLFSYSEEGS 60 AMPPCHSSSA FPNSIGSTTS SFSSAEYLMD FPQFEHQVSY PSVSYQPPIN SLDFSVHVSP 120 VSKFSLRPEK KRDVSHSWET LESDVRFPLH ECGNSAVCDK RQKLLYRNHQ DILAQLVAQS 180 TEEGLDSNLN KRQLVSSETV NRSSVGYNLE NALMRSPKFQ LQNVKKHSKA PIVVPITSYN 240 PNSGSFVPSK TRIRWTPDLH EKFVACVNCL GGSEKATPKG ILKLMDSDGL TIYHIKSHLQ 300 KYRIAKYLPE SSEGKFQRKA SANELQPLRI TEALQIQLEV QRHLHEQLEI QRNLQMRIEA 360 QGRQLQKLFK EQMKPNKNLT EAQDLEDFFP AKHQETAQDV QFFVLGEDHQ NNHFTSKIS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MNTKKIGCHE PTYGSSNCSS SEFVNPSCEK FNCPSLLFDC SPWKNNLNSS NLFSYSEEGS  60
AMPPCHSSSA FPNSIGSTTS SFSSAEYLMD FPQFEHQVSY PSVSYQPPIN SLDFSVHVSP  120
VSKFSLRPEK KRDVSHSWET LESDVRFPLH ECGNSAVCDK RQKLLYRNHQ DILAQLVAQS  180
TEEGLDSNLN KRQLVSSETV NRSSVGYNLE NALMRSPKFQ LQNVKKHSKA PIVVPITSYN  240
PNSGSFVPSK TRIRWTPDLH EKFVACVNCL GGSEKATPKG ILKLMDSDGL TIYHIKSHLQ  300
KYRIAKYLPE SSEGKFQRKA SANELQPLRI TEALQIQLEV QRHLHEQLEI QRNLQMRIEA  360
QGRQLQKLFK EQMKPNKNLT EAQDLEDFFP AKHQETAQDV QFFVLGEDHQ NNHFTSKIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-61	G2-like family protein