PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553137.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 355aa MW: 39912.4 Da PI: 4.883

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	82.5	8.8e-26	24	122	35	128
NAM 35 kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWv 122 k+ +i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++tgk+k+vl +ge+ g+kk++v+y + k+ekt+Wv XP_028553137.1 24 KDEGICYTHPQKLP-GVKQDGSASHFFHRTFKAYNTGTRKRRKINtddlgDVRWHKTGKTKPVLL-DGEHLGCKKIMVLYvsATKGGKAEKTNWV 116 4557********.677888999**************75545666899********.999*******6545777788* PP NAM 123 mheyrl 128 mh+y+l XP_028553137.1 117 MHQYHL 122 **98 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MAKVRKAGAE PHPFINEFIP TVEKDEGICY THPQKLPGVK QDGSASHFFH RTFKAYNTGT 60 RKRRKINTDD LGDVRWHKTG KTKPVLLDGE HLGCKKIMVL YVSATKGGKA EKTNWVMHQY 120 HLGIGEDEKD GEFVVSKILF QQQLKPCERS IVDPIIKTTE DVAAATVIMA CTGSATPEYH 180 DECQHMIQTS EETSDQLQVK VDHDPVENCE VYPAGEELHY QSFGTSNGTK ELHNEVPAQD 240 SQCAEEPKWW EGESQFLLDS QQLAEGIALC DEFLHSQSSY AEDEIKHSKS CLSDYAFIGV 300 EDFKKDLEEC QKLSRDNGQS SKSELDTTGD MRLSQLEFGS QDSSLGWEQA NLMTN

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MAKVRKAGAE PHPFINEFIP TVEKDEGICY THPQKLPGVK QDGSASHFFH RTFKAYNTGT  60
RKRRKINTDD LGDVRWHKTG KTKPVLLDGE HLGCKKIMVL YVSATKGGKA EKTNWVMHQY  120
HLGIGEDEKD GEFVVSKILF QQQLKPCERS IVDPIIKTTE DVAAATVIMA CTGSATPEYH  180
DECQHMIQTS EETSDQLQVK VDHDPVENCE VYPAGEELHY QSFGTSNGTK ELHNEVPAQD  240
SQCAEEPKWW EGESQFLLDS QQLAEGIALC DEFLHSQSSY AEDEIKHSKS CLSDYAFIGV  300
EDFKKDLEEC QKLSRDNGQS SKSELDTTGD MRLSQLEFGS QDSSLGWEQA NLMTN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-107	NAC family protein