PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553243.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

WOX

Protein Properties

Length: 337aa MW: 36910.6 Da PI: 8.1189

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	57	117	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ XP_028553243.1 57 KPRWNPKPEQIRILESIFNSgMVNPPRDEIRRIRSQLqiygQVGDANVFYWFQNRKSRSKH 117 89***************99************99999**************995 PP
2	Wus_type_Homeobox	110.7	7.9e-36	56	119	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+++L+ yG+++d+NVfyWFQNrk+R+++kq XP_028553243.1 56 PKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRSQLQIYGQVGDANVFYWFQNRKSRSKHKQ 119 689***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MASSNRHWPS LFKSKPSCTS SHLQWQHDIN HSSLLSAHCQ KPNSYASGSE ERTPEPKPRW 60 NPKPEQIRIL ESIFNSGMVN PPRDEIRRIR SQLQIYGQVG DANVFYWFQN RKSRSKHKQR 120 HLKSTAAAAK STALPPPPLT SVTSSSTSSS SSSGSNNKQI TIPTLSSFFD QNLFQAPILM 180 PELSLESSVL LPTSQPSYQL SSGELAGGSP AVWGDIILQE IMPGKNIGSV STDSASIACV 240 VSANMTTAMA TATASTVNEI QVAKSTVFIN DVAYEVIAGP LNIREAFGDE AVLLHSSGHP 300 VLTDEWGLTL QPLQHGASYY LVNSLFIYFS HIFIYLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	4e-57	WOX family protein