PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553258.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 216aa    MW: 23937 Da    PI: 10.5745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553258.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.4e-1388132347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+  ++ + ++lG+g+W+ I+r +  +Rt+ q+ s+ qky
   XP_028553258.1  88 PWTEQEHRTFLAGLEKLGKGDWRGISRNFVMTRTPTQVASHAQKY 132
                      8*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGGEKGLMLF GVRIVDGNRR WRQEGVGDGK DDDPVRQSML KSMSMVDLAT CAVTVSGEKI  60
AGDHGYLSEG GLEQASRRGG QERKRGVPWT EQEHRTFLAG LEKLGKGDWR GISRNFVMTR  120
TPTQVASHAQ KYFLRQSNPN KKKRRSSLFD VVISKKINNS GNFPTSLLKK SDDNFKNFDS  180
LNQDGHPVGL SSFTTIQSPA ASCSNTPIFH KINSTF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141145KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-42MYB_related family protein