PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553381.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 377aa MW: 42811.4 Da PI: 6.3638

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.3	1.5e-21	74	169	1	85
trihelix 1 rWtkqevlaLiearr.......emeerlrrgk...lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt + v++Li ++ +m+++ r+++ +kk++W+ vsk m+++g+ +sp+qC++k+++lnkryk+++e+ +++ t++++++ +++d+ XP_028553381.1 74 KWTVDVVRLLISLVAsigddagSMDTAGRKQSvamQKKGKWKMVSKLMMQKGCYVSPQQCEDKFNDLNKRYKRLNEILGRGtTCQVVENPALLDS 168 7************55544444444444432667********************************************77999999998887 PP trihelix 85 l 85 + XP_028553381.1 169 I 169 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MDHPIGGGLF PGSSAGILDL QPSTRHRLPP PAAQSMSLFS DDEDAAIAGG GGEDSPSHDS 60 LHRGKKGSPW QRMKWTVDVV RLLISLVASI GDDAGSMDTA GRKQSVAMQK KGKWKMVSKL 120 MMQKGCYVSP QQCEDKFNDL NKRYKRLNEI LGRGTTCQVV ENPALLDSIP HVSQKAKDDV 180 RRILSSKHLF YREMCAYHNG QRVLDSKVGF LKCGDAHEVE DEDEENEEEK EEDDEDEDDG 240 CGSDDFGKVG YDKLCAEIDL VVQDSTKTQC ERSVWIRKRL LLLQQERVGI QSEAFELQKR 300 RMKWKRFCSK KDRELESLRM KNERLRLENE RMTLQVRHKE LELDSMRSGE MVEPFVTQVE 360 GERVRAHSGV GRLQLSQ

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MDHPIGGGLF PGSSAGILDL QPSTRHRLPP PAAQSMSLFS DDEDAAIAGG GGEDSPSHDS  60
LHRGKKGSPW QRMKWTVDVV RLLISLVASI GDDAGSMDTA GRKQSVAMQK KGKWKMVSKL  120
MMQKGCYVSP QQCEDKFNDL NKRYKRLNEI LGRGTTCQVV ENPALLDSIP HVSQKAKDDV  180
RRILSSKHLF YREMCAYHNG QRVLDSKVGF LKCGDAHEVE DEDEENEEEK EEDDEDEDDG  240
CGSDDFGKVG YDKLCAEIDL VVQDSTKTQC ERSVWIRKRL LLLQQERVGI QSEAFELQKR  300
RMKWKRFCSK KDRELESLRM KNERLRLENE RMTLQVRHKE LELDSMRSGE MVEPFVTQVE  360
GERVRAHSGV GRLQLSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	303	RKRLLLLQQERVGIQSEAFELQKRRMK
2	300	306	RRMKWKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	7e-73	Trihelix family protein