PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553412.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 686aa MW: 79331.4 Da PI: 7.1694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553412.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.2	2.4e-22	85	175	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA ++GF +r+++s++++r+g ++++fvC keg+++++ ++ ++k++r+r + r gC a+++v ++ ++w++tkl+leH+H + XP_028553412.1 85 FYNAYALRLGFGIRVARSRSERRKGieVLVMKRFVCLKEGHHKKKVTElANKKKRKRLSIRDGCPAMMEVVRRGADRWVITKLVLEHTHVV 175 9************9999986665226789*********99998899999********************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MEYTSSEDDE LIEDYVDLEE DIMTSDVEQQ AGEVAASLHF FNHQDNSLSL VHTIGNELIV 60 SEADVKSQDP HLGMEFESDT VARLFYNAYA LRLGFGIRVA RSRSERRKGI EVLVMKRFVC 120 LKEGHHKKKV TELANKKKRK RLSIRDGCPA MMEVVRRGAD RWVITKLVLE HTHVVVSPDK 180 VREIQLNQLT GKDREHENLL REMRQKIFGE GGAQGLLEHF KKVQAENSGF FYSMNVDDRN 240 CLANIFWADS RARIAYKYFG DAVVFDTTYK KNENMMPFAA FSGVNHHLHP VNFGCALIID 300 KTESSYAWLF ETWLTAMSGR HPISLTTDQG KALGAAVAKA FPTTRHRICK WRVLSRCKKK 360 LADVYSRYPN LPEELRKYVL ECETSDVFEA CWKLVLDKYN LRENSWLQLV YNIRNKWVPA 420 YLKDSFFAEL HTTQRSESIN TFFRKNFDTK ISLQAFISKF DQAMDNRYEK ELQEDFDALR 480 SQQILKTDSH MEKQTAGIYT RAVFERFQAE LVEALDHYTE KIQDGAISKY TVERHGDDHI 540 HRRHIVAFNE SEKKAVCTCY KFESSGILCK HVLVVFFFNG VVLLPEHYIL KRWTKKAKSG 600 IVFDEGDVET QSYCQESPTL RYHDIFHDAL KVAEKGAASI ETYKFAKEVL LKAFSEIAGL 660 EEETSCFDLL LQELSLRFIG QSQGKL

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MEYTSSEDDE LIEDYVDLEE DIMTSDVEQQ AGEVAASLHF FNHQDNSLSL VHTIGNELIV  60
SEADVKSQDP HLGMEFESDT VARLFYNAYA LRLGFGIRVA RSRSERRKGI EVLVMKRFVC  120
LKEGHHKKKV TELANKKKRK RLSIRDGCPA MMEVVRRGAD RWVITKLVLE HTHVVVSPDK  180
VREIQLNQLT GKDREHENLL REMRQKIFGE GGAQGLLEHF KKVQAENSGF FYSMNVDDRN  240
CLANIFWADS RARIAYKYFG DAVVFDTTYK KNENMMPFAA FSGVNHHLHP VNFGCALIID  300
KTESSYAWLF ETWLTAMSGR HPISLTTDQG KALGAAVAKA FPTTRHRICK WRVLSRCKKK  360
LADVYSRYPN LPEELRKYVL ECETSDVFEA CWKLVLDKYN LRENSWLQLV YNIRNKWVPA  420
YLKDSFFAEL HTTQRSESIN TFFRKNFDTK ISLQAFISKF DQAMDNRYEK ELQEDFDALR  480
SQQILKTDSH MEKQTAGIYT RAVFERFQAE LVEALDHYTE KIQDGAISKY TVERHGDDHI  540
HRRHIVAFNE SEKKAVCTCY KFESSGILCK HVLVVFFFNG VVLLPEHYIL KRWTKKAKSG  600
IVFDEGDVET QSYCQESPTL RYHDIFHDAL KVAEKGAASI ETYKFAKEVL LKAFSEIAGL  660
EEETSCFDLL LQELSLRFIG QSQGKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	141	KKKVTELANKKKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-147	FAR1 family protein