PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028553469.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 233aa    MW: 26225.6 Da    PI: 8.286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028553469.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.7e-124892347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      WT+eE++ ++ + k+lG+g+W  Iar    +Rt+ q+ s+ qky
   XP_028553469.1 48 QWTEEEHKMFLVGLKKLGKGDWCGIARNYVFTRTPTQVASHAQKY 92
                     6*****************************99************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MRKKCSHCNL DGHNSRTCQS QGVRIFGKKL TPSDCFPSTT TARKKAVQWT EEEHKMFLVG  60
LKKLGKGDWC GIARNYVFTR TPTQVASHAQ KYFLRHSSQS MRNRRSSVFD IAPDEEAQEA  120
GSSSTTVHPH EVSENQPAMQ INSSTDTEPV ISDPPANLNC CYPAFFPSKL YSYPAVYPGF  180
LQPGFPFPMA YWPTYPAQAP VLQSHHEIFK PVAVRLKSSV DEEEIDDLPR LSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-53MYB_related family protein