PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553556.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 166aa MW: 19675.3 Da PI: 10.0294

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.2	2.2e-19	4	49	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W +eEde+l+++v+++G+++W++Ia+++ gR++k+c++rw++ XP_028553556.1 4 RGHWMPEEDEKLKELVTRHGPHNWNAIAEKLK-GRSGKSCRLRWFNQ 49 899**************************9.*********996 PP
2	Myb_DNA-binding	55.1	1.8e-17	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ ++ +G++ W+ Iar ++ gRt++ +k++w+ XP_028553556.1 56 RSPFTKEEEERLITSHRIHGNR-WSVIARFFP-GRTDNAVKNHWHV 99 789*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence
MCTRGHWMPE EDEKLKELVT RHGPHNWNAI AEKLKGRSGK SCRLRWFNQL DPRILRSPFT 60 KEEEERLITS HRIHGNRWSV IARFFPGRTD NAVKNHWHVI MARRSRETSK VLKLEEYAPS 120 EEKQRREELK LKFYSDFFSS NLIVGGDEGI SYGYNSTSQS LLFFSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	3e-69	MYB family protein