PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553559.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 451aa MW: 52433.6 Da PI: 6.3435

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.2	6.6e-27	108	157	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWt eLH Fv+ave+LGG+e+AtPk +l++m+vkg++++hvkSHLQ XP_028553559.1 108 PRLRWTAELHLLFVRAVERLGGQERATPKLVLQMMNVKGISIAHVKSHLQ 157 8************************************************* PP
2	Myb_DNA-binding	46.5	8.5e-15	109	157	1	45
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwq 45 r+rWT+e+++l+v+av++lGg t+k++ ++m+ kg + ++ks++q XP_028553559.1 109 RLRWTAELHLLFVRAVERLGGQeraTPKLVLQMMNvKGISIAHVKSHLQ 157 89**********************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MEMGREKVIE VVEKEEVEER RYERSDQRGR KRLNSKLDLN EEVVVVVAEN EGEGEGDNEE 60 EKEIEEEMME GEEEGSSSNN NSGDNRFYGE NSAAAAVGVR QYVKSNLPRL RWTAELHLLF 120 VRAVERLGGQ ERATPKLVLQ MMNVKGISIA HVKSHLQYMP SSFVKYQMYR SKKLDDSGQE 180 RFTISSAVRV YLCGDRMQNV IQRPIRMLYV SAFSSLDAHL KRESSHDLFF QPFRMRNESL 240 QARNIYETQK HLQIRNAKLR QQEWAFNQQK MARDTFSYEH SRTSQHRQYS QALPLNSSVT 300 NFNHNFVVKA NNFCCFNNIK SQSQEHQWSK LENIFRKERE EHSVDAKRMR LSRDHGHGIP 360 DLQLSLIPSS VEKVLNGNGA SDDEEEYEEE EEETELSLSL SPPTCRSRDE SFKLQGTVMN 420 TEIDFWKTGS KKKSTLGFRT FDLSMSIRAL E

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MEMGREKVIE VVEKEEVEER RYERSDQRGR KRLNSKLDLN EEVVVVVAEN EGEGEGDNEE  60
EKEIEEEMME GEEEGSSSNN NSGDNRFYGE NSAAAAVGVR QYVKSNLPRL RWTAELHLLF  120
VRAVERLGGQ ERATPKLVLQ MMNVKGISIA HVKSHLQYMP SSFVKYQMYR SKKLDDSGQE  180
RFTISSAVRV YLCGDRMQNV IQRPIRMLYV SAFSSLDAHL KRESSHDLFF QPFRMRNESL  240
QARNIYETQK HLQIRNAKLR QQEWAFNQQK MARDTFSYEH SRTSQHRQYS QALPLNSSVT  300
NFNHNFVVKA NNFCCFNNIK SQSQEHQWSK LENIFRKERE EHSVDAKRMR LSRDHGHGIP  360
DLQLSLIPSS VEKVLNGNGA SDDEEEYEEE EEETELSLSL SPPTCRSRDE SFKLQGTVMN  420
TEIDFWKTGS KKKSTLGFRT FDLSMSIRAL E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-32	G2-like family protein