PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553677.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 221aa MW: 25274.1 Da PI: 9.3067

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553677.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.3	9.2e-47	3	159	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..............................kvkaeekewyfFskr 64 l pGfrFhPtdeel+++yL +kv ++++++ +i++v+++k+eP dLp k k+ ++ ke yfF++ XP_028553677.1 3 LSPGFRFHPTDEELITHYLSNKVLNTSFDA-IAIAQVKLNKCEPCDLPsKnlhsssssvsisassiiyililfrlnsersKI-GGGKEFYFFCEL 95 579***********************99.88***********5489*********99999999887764322.367899** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ky+tg r+nrat++gyWk+tgkdke+ + ++ l g+kktLvfykgrapkge+t+Wvmheyrle XP_028553677.1 96 GLKYSTGLRRNRATDAGYWKSTGKDKEIRR-ENILLGMKKTLVFYKGRAPKGERTEWVMHEYRLE 159 *************************9.999***************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MELSPGFRFH PTDEELITHY LSNKVLNTSF DAIAIAQVKL NKCEPCDLPS KNLHSSSSSV 60 SISASSIIYI LILFRLNSER SKIGGGKEFY FFCELGLKYS TGLRRNRATD AGYWKSTGKD 120 KEIRRENILL GMKKTLVFYK GRAPKGERTE WVMHEYRLED SYDKWILCRV FEKGLPGKEK 180 KAFGLANIEE EMARRVPLPP LMDAQGLERV PPGRSELNFD N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	3e-61	NAC family protein