PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028553698.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARR-B

Protein Properties

Length: 508aa MW: 56879.1 Da PI: 6.1346

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028553698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.2	6.4e-27	190	243	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+ W+peLH++F+++v+qL G+ +A Pk+il++m++ gLt+e+v+SHLQkYR XP_028553698.1 190 KPRITWSPELHAKFINVVNQL-GISRAAPKKILDMMNISGLTRENVASHLQKYRK 243 79*****************.******************************6 PP
2	Myb_DNA-binding	38.1	3.6e-12	194	242	3	48
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W++e++ +++++v+qlG +k+I +m+ g+t++++ s++qky+ XP_028553698.1 194 TWSPELHAKFINVVNQLGISraAPKKILDMMNiSGLTRENVASHLQKYR 242 6***************999*************************7 PP
3	Response_reg	70.5	7.1e-24	18	124	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+ +v++ l+ +l k gy +v++ +++ ealell++++ +Dl++ D++mp+mdG++ll+ i e++lp+i+++ + + + + + G XP_028553698.1 18 VLAVDDDSFVLRTLELLLLKCGY-RVTVSQHAFEALELLRANKddYDLVISDVKMPDMDGFKLLE-IVGLEMDLPVIMLSVDCDVKSVMKGIMHG 110 799******************.***********777777***************7.5556679****************** PP ESEEEESS--HHHH CS Response_reg 94 akdflsKpfdpeel 107 a d+l+Kp eel XP_028553698.1 111 AVDYLTKPARLEEL 124 ******999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MDESDAEIPD GFPVGMSVLA VDDDSFVLRT LELLLLKCGY RVTVSQHAFE ALELLRANKD 60 DYDLVISDVK MPDMDGFKLL EIVGLEMDLP VIMLSVDCDV KSVMKGIMHG AVDYLTKPAR 120 LEELQLIWKH VARRSLDEKK DQNTRKQLGH AAKFEDFQKL HQPKKCKDRN KERDNEDSAD 180 SDEEMTPQKK PRITWSPELH AKFINVVNQL GISRAAPKKI LDMMNISGLT RENVASHLQK 240 YRKGLQKNAI ELSQQLFKHP GASAYTENSL LMTANPQRMA ICSFDRPHTN IYKNMSVASS 300 CTPAQQSCNG YSKVPSTSLF HSPTHQNNFC QQYAMNPHSG QLGTQQVTLT KNSYMMTAST 360 QVSSYQSFAP SSSQLDSAAQ SCSQNPRKVD VDSRLNSLYL LGHALDHQTV DMFISNNQSD 420 NYSVELDAVL SSVQKQQQFG SCLEADVEAG AHINWDSLDV QSSSHEDYMG SGPFKFPVGP 480 AEQFSAEITF AFNKVEHTDD LHAALKQR

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MDESDAEIPD GFPVGMSVLA VDDDSFVLRT LELLLLKCGY RVTVSQHAFE ALELLRANKD  60
DYDLVISDVK MPDMDGFKLL EIVGLEMDLP VIMLSVDCDV KSVMKGIMHG AVDYLTKPAR  120
LEELQLIWKH VARRSLDEKK DQNTRKQLGH AAKFEDFQKL HQPKKCKDRN KERDNEDSAD  180
SDEEMTPQKK PRITWSPELH AKFINVVNQL GISRAAPKKI LDMMNISGLT RENVASHLQK  240
YRKGLQKNAI ELSQQLFKHP GASAYTENSL LMTANPQRMA ICSFDRPHTN IYKNMSVASS  300
CTPAQQSCNG YSKVPSTSLF HSPTHQNNFC QQYAMNPHSG QLGTQQVTLT KNSYMMTAST  360
QVSSYQSFAP SSSQLDSAAQ SCSQNPRKVD VDSRLNSLYL LGHALDHQTV DMFISNNQSD  420
NYSVELDAVL SSVQKQQQFG SCLEADVEAG AHINWDSLDV QSSSHEDYMG SGPFKFPVGP  480
AEQFSAEITF AFNKVEHTDD LHAALKQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	1e-80	ARR-B family protein